cli, gapi, lang, lib: Add a flag to skip autoedges

The GAPI API is a bit of a mess, but I think this seems to work for
standalone run and also deploys. Hopefully I didn't add any unnecessary
extra dead code here, but that's archaeology for another day.

cli/run.go

@@ -141,6 +141,8 @@ func (obj *RunArgs) Run(ctx context.Context, data *cliUtil.Data) (bool, error) {
 			Noop:     obj.Noop,
 			Sema:     obj.Sema,
 			//Update: obj.Update,
+
+			NoAutoEdges: obj.NoAutoEdges,
 		},
 
 		Fs:    standaloneFs,